Opportunity Information: Apply for 10HQPA0040
Apply for 10HQPA0040
- The Geological Survey in the science and technology and other research and development sector is offering a public funding opportunity titled "Cooperative Ecosystem Studies Unit, Southern Appalacian CESU" and is now available to receive applicants.
- Interested and eligible applicants and submit their applications by referencing the CFDA number(s): 15.808 U.S. Geological Survey Research and Data Collection.
- This funding opportunity was created on Feb 25, 2010 and posted on Feb 25, 2010.
- Applicants must submit their applications by Mar 9, 2010. (Agency may still review applications by suitable applicants for the remaining/unused allocated funding in 2026.)
- The funding agency has allocated a total of $17,000.00 to eligible and selected applicants.
- The number of recipients for this funding is limited to 1 candidate(s).
- Eligible applicants include: Others (see text field entitled Additional Information on Eligibility for clarification).
- This financial assistance opportunity is being issued under a Cooperative Ecosystems Studies Unit (CESU) Program. CESU s are partnerships that provide research, technical assistance, and education. Eligible recipients must be a participating partner of the Southern Appalachian Cooperative Ecosystem Studies Unit (CESU) Program.
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Opportunity Summary:
This opportunity (Funding Opportunity Number 10HQPA0040) is a U.S. Geological Survey (USGS) cooperative agreement offered through the Southern Appalachian Cooperative Ecosystem Studies Unit (CESU). It is a small, targeted research support award intended to fund one university partner to work directly with USGS scientists on water-quality and microbial source tracking work. The project centers on analyzing and interpreting data that USGS has already collected, plus conducting additional laboratory testing on water samples that USGS will provide. The overall goal is to strengthen the scientific conclusions about fecal contamination in studied streams, including whether contamination is more consistent with human sources, bovine sources, or a mix.
The core technical work is fecal source tracking using real-time PCR (qPCR). Specifically, the university partner is expected to run assays targeting a region of the 16S rRNA gene associated with Bacteroides species, a common molecular indicator used to infer fecal inputs. For each sample, the Bacteroides testing is expected to include three distinct assays: AllBac (total Bacteroides), HuBac (human-associated marker), and BoBac (bovine-associated marker). In addition to Bacteroides source markers, the university will perform a limited set of human pathogen-related assays. The exact pathogen panel is to be negotiated case by case, but it should include at least three assays, specifically Salmonella plus two E. coli pathogen markers. In practice, this means the partner needs both the laboratory capability to run qPCR reliably and the scientific judgment to choose and justify pathogen targets that fit the study needs.
Beyond generating lab results, the university must be able to translate qPCR outputs into usable quantitative measures and interpretations. That includes calculating molecular copy counts for total, human, and bovine Bacteroides markers; computing ratios among those markers (for example, human-to-total or bovine-to-total); and also calculating ratios between E. coli molecular copies and total Bacteroides molecular copies. The partner must then use those calculated values to estimate fecal loads in the streams being studied, not just report presence/absence or raw qPCR values. Finally, the partner is expected to interpret what the ratios and load estimates imply about fecal source at each study site, with explicit attention to distinguishing likely human versus bovine contributions.
The collaboration expectations are substantial for a grant of this size. The selected university is not just a fee-for-service lab; it is expected to participate actively with USGS in the broader analysis, synthesis, and publication of the complete study dataset. In other words, the award is meant to support a true research partnership where the university contributes both technical lab capacity and scientific interpretation that can stand up in peer-reviewed publication.
Eligibility is limited to institutions that are already participating partners in the Southern Appalachian CESU Program, since the award is issued under the CESU partnership framework. There is no cost sharing or matching requirement. The posting date was February 25, 2010, with an original and final closing date of March 9, 2010, and the opportunity was archived on April 8, 2010. USGS anticipated making one award with an estimated total funding amount of $17,000. The funding activity category is Science and Technology and other Research and Development, and the CFDA listing is 15.808 (USGS Research and Data Collection).
To be competitive, the university must clearly demonstrate three things: intimate familiarity with the study and the data collected so far (suggesting the ideal applicant may already be involved or closely aligned with the existing work), in-house real-time PCR capabilities (so the assays can be run reliably without outsourcing), and a proven track record of applying real-time PCR to bacterial source tracking as shown through peer-reviewed publications. The listed contact for access issues with the full announcement is Faith Graves, Contract Specialist, at 703-648-7356.
FAQs: USGS Cooperative Agreement (Funding Opportunity Number 10HQPA0040) - Southern Appalachian CESU
What is this funding opportunity?
This is a U.S. Geological Survey (USGS) cooperative agreement offered through the Southern Appalachian Cooperative Ecosystem Studies Unit (CESU). It is described as a small, targeted research support award to fund one university partner to work directly with USGS scientists on water-quality and microbial source tracking research.
What is the main purpose of the project?
The project aims to strengthen scientific conclusions about fecal contamination in studied streams by analyzing and interpreting data USGS has already collected and by conducting additional laboratory testing on water samples that USGS will provide. A central objective is determining whether contamination patterns are more consistent with human sources, bovine sources, or a mix.
What type of award is it?
It is a cooperative agreement under the CESU partnership framework, with active collaboration expected between the funded university and USGS scientists.
How many awards did USGS expect to make?
USGS anticipated making one award.
What is the estimated total funding amount?
The estimated total funding amount is $17,000.
Is cost sharing or matching required?
No. The opportunity states there is no cost sharing or matching requirement.
Who is eligible to apply?
Eligibility is limited to institutions that are already participating partners in the Southern Appalachian CESU Program, because the award is issued under the CESU partnership framework.
What is the technical focus of the work?
The core technical work is fecal source tracking using real-time PCR (qPCR), focused on assays targeting a region of the 16S rRNA gene associated with Bacteroides species, a common molecular indicator used to infer fecal inputs.
What Bacteroides assays are expected for each sample?
For each sample, the Bacteroides testing is expected to include three distinct assays: AllBac (total Bacteroides), HuBac (human-associated marker), and BoBac (bovine-associated marker).
Are pathogen-related assays included in the scope?
Yes. In addition to Bacteroides source markers, the university will perform a limited set of human pathogen-related assays.
What is the minimum pathogen panel requirement?
The pathogen panel is to be negotiated case by case, but it must include at least three assays: Salmonella plus two E. coli pathogen markers.
Who provides the water samples for laboratory testing?
USGS will provide the water samples that the university partner will test.
Is the university expected to analyze existing USGS data as well as generate new lab data?
Yes. The project centers on analyzing and interpreting data that USGS has already collected, plus conducting additional laboratory testing on USGS-provided water samples.
What laboratory capability is required?
The university partner needs in-house real-time PCR (qPCR) capability to run the assays reliably without outsourcing.
What calculations and data products are expected beyond raw qPCR results?
The partner is expected to translate qPCR outputs into usable quantitative measures and interpretations, including calculating molecular copy counts for total, human, and bovine Bacteroides markers and computing ratios among those markers (such as human-to-total or bovine-to-total).
Are any cross-target ratios specifically mentioned?
Yes. The partner is also expected to calculate ratios between E. coli molecular copies and total Bacteroides molecular copies.
Is the work limited to reporting presence/absence?
No. The partner is expected to use calculated values to estimate fecal loads in the streams being studied, not just report presence/absence or raw qPCR values.
What interpretation is expected from the university partner?
The partner must interpret what the computed ratios and load estimates imply about fecal source at each study site, with explicit attention to distinguishing likely human versus bovine contributions.
Is this a fee-for-service laboratory arrangement?
No. The selected university is expected to participate actively with USGS in broader analysis, synthesis, and publication of the complete study dataset. The award is intended to support a true research partnership, not a fee-for-service lab relationship.
What evidence should an applicant provide to be competitive?
The opportunity indicates the university must clearly demonstrate: (1) intimate familiarity with the study and the data collected so far, (2) in-house real-time PCR capabilities, and (3) a proven track record applying real-time PCR to bacterial source tracking, as shown through peer-reviewed publications.
What is the funding activity category?
The funding activity category is Science and Technology and other Research and Development.
What is the CFDA listing for this opportunity?
The CFDA listing is 15.808 (USGS Research and Data Collection).
When was the opportunity posted and when did it close?
The posting date was February 25, 2010. The original and final closing date was March 9, 2010.
Is this opportunity still open?
No. The opportunity was archived on April 8, 2010.
Who is the contact for access issues with the full announcement?
The listed contact for access issues with the full announcement is Faith Graves, Contract Specialist, at 703-648-7356.
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